Yes, but we would need the log of the server when it was started as a service, in order to see what happens then.
We need to see whether this is the Domino server or Windows service problem.
Maybe something's wrong with that service's arguments.
You can check that route. Try to remove notes.ini and other two params from the service in registry:
HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\
I know my domino had a problem with parenthesis in its path.