Add the following options to your command.
/NDL Exclude directory names (listing)
/XO Exclude Old files
/XX Exclude Extra files (files in the destination, but not in the original source)
You may want to use this option, but most likely not.
/XL Exclude Lonely (Unique files are not copied)
New command:
Robocopy "!BasePath_Source!" "!BasePath_Dest!" * /NDL /XX /XO /TEE /ETA /E /COPYALL /MIR /NP /ZB /LOG+:"%File_LOG_Mirror%_temp.TXT" /XF Thumbs.db ~*.* *.swp *.dmp *.tmp pagefile.sys hiberfil.sys /XD MCAF*.TMP "$VAULT$.AVG" "_RESTORE" "MSOCache" "Recycled" "RECYCLER" "Temporary Internet Files" "System Volume Information" "Virtual Machines *" "temp" ISO