The value you specified during passwordfile creation is use to login as sysdba and/or sysoper user.
for example you give password "Oracle" during password file creation then,
sql>sys/oracle as sysdba (will work)
sql>sys/oracle1 as sysdba (Will not)
Now later on you grant sysdba privs to user XYZ with password abc
so
sql>XYZ/abc (Will connect to schema XYZ)
sql>XYZ/Oracle as sysdba (will connect to schema SYS)
I hope this make sense now