as you can see at the bottom of your application you have file locations displayed and for example that first one you selected is related to your Java application.
I doubt that MSE will remove anything that is needed so just go ahead and delete everything. Also go to malwarebytes.org and install their application and see what it finds as it's much better at detecting threats than MSE
After your clear your machine make sure you update java, flash and adobe reader software on your machine