While you have the system at the command prompt, try running a chkdsk /p /r. The infected file may have damaged the system.
http://www.microsoft.com/resources/documentation/windows/xp/all/proddocs/en-us/bootcons_chkdsk.mspx?mfr=true/p Performs an exhaustive check even if the drive is not marked for chkdsk to run. This parameter does not make any changes to the drive.
/r Locates bad sectors and recovers readable information. Implies /p.